there were articles in Hurriyet, Milliyet and haberturk that this new MIT Mustesari (Official) had close ties to Iran and this could mean passing Israeli secrets to Iran. Even the well respected Turkish media reported it and no reaction at that time. Once Barak repeated it you get upset. I guess Mr Carikcioglu said it best, overreacting.
from the article: Turkey summons Israel's ambassador over Barak's remarks on spy chief