There are many reasons for strong ties between Israel and South Sudan. Some are obvious, some are not. There's also no parallel between Palestinians who have a conflict with Israel, and South Sudan which does not. IF you weren't a hypocrite I assume you'd say the same for Turkey, Iran, Syria and Iraq for not accepting Kurdistan and Turkey for also not leaving Northern Cyprus. But you are, aren't you?
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from the article: Israel announces full diplomatic ties with South Sudan